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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.8819s0132.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | WOX | ||||||||
Protein Properties | Length: 138aa MW: 15801.4 Da PI: 6.723 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 45.8 | 1e-14 | 50 | 110 | 2 | 56 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC.....TS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl.....gLterqVkvWFqNrRakek 56 ++ ++++++q ++Le+lF + +ps +++++++ kl ++++ +V+ WF+Nr+ k Bostr.8819s0132.1.p 50 KPEWKPNQHQAQILEDLFIGgTVNPSLTDIKQITIKLqnfgeEVEDVDVYKWFHNRKFSLK 110 899****************99***********************************98776 PP | |||||||
2 | Wus_type_Homeobox | 60.2 | 4.7e-20 | 50 | 112 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGk.iedkNVfyWFQNrkaRerqk 64 ++ W P+++Q +iLe+l+ G+++P+ i++it +L+++G+ +ed V+ WF Nrk ++k Bostr.8819s0132.1.p 50 KPEWKPNQHQAQILEDLFIGGTVNPSLTDIKQITIKLQNFGEeVEDVDVYKWFHNRKFSLKHK 112 678**************************************55**************776666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-7 | 42 | 115 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-12 | 50 | 110 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-4 | 53 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005773 | Cellular Component | vacuole | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSSSSNKNSN KDHDRHNHQG QNDDIHTPSF MHNFNCNISS PSSPVVSDPK PEWKPNQHQA 60 QILEDLFIGG TVNPSLTDIK QITIKLQNFG EEVEDVDVYK WFHNRKFSLK HKLRDAKQSR 120 QESKEINQVP VINNEVD* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006698 | 7e-79 | AB006698.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19. | |||
GenBank | CP002688 | 7e-79 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_199413.1 | 1e-44 | homeobox-leucine zipper transcription factor family protein | ||||
TrEMBL | Q9FNM1 | 2e-44 | Q9FNM1_ARATH; Homeobox-leucine zipper transcription factor family protein | ||||
STRING | AT5G46010.1 | 4e-44 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM30492 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46010.1 | 6e-47 | WOX family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.8819s0132.1.p |